Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906910.1_cds_XP_016457084.1_50848
CDS Infomation

[gene=LOC107780973] [db_xref=GeneID:107780973] [protein=C2 domain-containing protein At1g53590-like] [partial=5'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016457084.1] [location=complement(join(54241..55314,55502..55625,56666..56852,56931..57023,58563..58611,58864..58905,58991..>59143))] [gbkey=CDS]
Sequence

GTCTTGGTTGGGGTAAAGTTCTTAAGGAAGTGGCCGTTTATCGGTCGTTTGCGGGTGTGC
TTTGTGGAGCCTCCTTATTTTCAGATGACTGTGAAGCCAATTTTCACACATGGGCTTGAT
GTAACAGAACTTCCTGGAATTGCTGGATGGATGGATAAACTACTTGCTGTTGCCTTTGAG
CAGACACTTGTCGAGCCCAACATGCTGGTGGTGGATGTTGAGAAGTTTGTGTCGCCGCAA
CCAGAAAACTGGTTCTCGGTTGATGCTAAGGAGCCCATTGCTTTTGTTATTTTAGAAGTT
CTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATGGATTGGCTGATCCATATGTTAAG
GGACACCTTGGCCCCTACAGATTCAGGACTAAGACTCGGAAGAAGACATTGACTCCACAG
TGGAATGAGGAGTTCAAGATTCCAATCTGTACATGGGAGTCTCCTAACAACATGCTCAAT
CTAGAAGTTCGTGACAAGGACCATTTTATTGATGATACATTGGGAGATTGTTCCATCAAC
ATCTGCGATTTAAGGGATGGGCAGAGGCGTGATATGTGGCTGTCTCTTCAGAACATTAAA
ATGGGGAGATTGCATCTTGCCATAACTGTTGTTGGCTGTAGCAAAAAGGGTGCGGAGCAG
TCATATGAGCGAGGAAGCGTGGACGATGAACAGGATATCAAATTTGCTGAGATGGATACA
ACTGAACAAAGCTCCTTAACCACTGAATCAGCCGATAAATCATCAAAAGCTGCAGATAAG
TATGAACCTATTAATATCGAAGGGCAGCAGGAGACTGGTATATGGGTACACCATCCAGGG
AGTGAAGTAGCACAAGTCTGGGAACCAAGAAAGGGAAAAAGCAGGGTTGATGGGGAAGTT
CTTGGCGTGAGTGGTGATTCCAAGGGAAGTTTTAAGTCAACAGCAGGGGGCTCCACTCAC
AATGATGAGTGCAGGTCTGATGGAAGTGTTAATGGAAGTAAGCCAGATTCTCCTAGTCGA
ATTCACAGGGGTTTACATAAGATCAGCTCGCTTTTCCACAGAAGTCCTAGACACGAGGAT
AAGTCAGGCAATCTCGGAGAACCTGAGACATCTCAACACGAGAATCTTAGGGCGGTTAGT
GCCAAGGAAATTGGAGTGAAGATTATAGTGGATGACACGGTTTCCCTTTCATTATTGGCC
ACAACACCTACAGAAGATGGAAAGGAGAGTCATGAGGGAAATGGGGAACGCCCCAAAAAG
GGGAGAGTGAGAGACAAGGCAAAGAACATCCTTAAACATGCTGGTAAGTCTGTTGGTGGT
GGCATAAAGAAAGCGGTGTCGCGGAAGTCATCAGGAAAATCTAAAGGGGAGCTAGAATCA
TCAGAGACAGAGAGAGTGAGCTCCCTGGAATCTGATTCTTCTGATGCAGAGTCTCAACAT
TCATCAATTGATTCGCCTCGAGTTGTAGCACCTTCAGTTGGCAACACTTCCTTAGCCAGC
TCTGGTATTGAGAGTTTTGACACCACAATAAAGACCAGTGGACTGGTAGATAGGGAAAGC
ATTAAAGGTCCAGATGAGGTAGCAGGGAACGCAAAAGACAATCATGGCTTTGGTCAGACT
TCAAGTTTCAAAANCCCGTACAGTCTCTTTAAGCAGATTGATGTTCTTATTCCGTTTTAC
TTGTATATGCTGTTATGTCCTGCCTGTAATTGCTTCATGTAG

Peptide Sequence

PEP ID

XP_016457084.1
PEP Infomation

PREDICTED: C2 domain-containing protein At1g53590-like [Nicotiana tabacum]
Sequence

MTSITDATIIHHVGIVLLLLWLLNSFDCCHPFAYFLSLIYLYMVHEQYVTKLRRKLQFEE
KRQSSQRRKEAAIQHLYLGRNPPMFTEMRVLRESTGDDHLVLELGMNFRTADDMSALLAV
KLRKRLGFGMWAKLHLLGMHVEGKVLVGVKFLRKWPFIGRLRVCFVEPPYFQMTVKPIFT
HGLDVTELPGIAGWMDKLLAVAFEQTLVEPNMLVVDVEKFVSPQPENWFSVDAKEPIAFV
ILEVLEAADMKPSDLNGLADPYVKGHLGPYRFRTKTRKKTLTPQWNEEFKIPICTWESPN
NMLNLEVRDKDHFIDDTLGDCSINICDLRDGQRRDMWLSLQNIKMGRLHLAITVVGCSKK
GAEQSYERGSVDDEQDIKFAEMDTTEQSSLTTESADKSSKAADKYEPINIEGQQETGIWV
HHPGSEVAQVWEPRKGKSRVDGEVLGVSGDSKGSFKSTAGGSTHNDECRSDGSVNGSKPD
SPSRIHRGLHKISSLFHRSPRHEDKSGNLGEPETSQHENLRAVSAKEIGVKIIVDDTVSL
SLLATTPTEDGKESHEGNGERPKKGRVRDKAKNILKHAGKSVGGGIKKAVSRKSSGKSKG
ELESSETERVSSLESDSSDAESQHSSIDSPRVVAPSVGNTSLASSGIESFDTTIKTSGLV
DRESIKGPDEVAGNAKDNHGFGQTSSFKXPYSLFKQIDVLIPFYLYMLLCPACNCFM

Transcript Sequence

Gene sequence data has not been registered.